Re: [Gmod-ajax] [External] Re: Inquiry

[Colin <col...@gm...>]

Thanks for reporting, Mm10 is a default genome that we ship in JBrowse 2
desktop, but we have not fleshed it out as a resource and it does not yet
have a gene track or gene names indexed


We can definitely add this to our todo list!



-Colin

On Mon, May 23, 2022 at 12:18 PM Scott Cain <sc...@sc...> wrote:

> Please keep the JBrowse mailing list looped in, since more eyes==more
> chance of finding the problem!
>
> Is this in the desktop application or the webserved JBrowse? Can you send
> a jbrowse.conf file (which you would have if it's a web application)?
> Troubleshooting the desktop application might be a little harder, but I
> imagine there is a problem configuring the search index. If you're using
> the desktop version, can you send a screenshot of the configuration window
> around configuring search for the mouse genome?
>
> On Mon, May 23, 2022 at 10:55 AM Chang, Hsi <xz...@iu...> wrote:
>
>> I test on my laptop.  Yes, i am not able to put a gene name into the box
>> instead only coordinate.
>>  No problem when using the human genome.
>>
>>
>> ------------------------------
>> *From:* Scott Cain <sc...@sc...>
>> *Sent:* Monday, May 23, 2022 1:36 PM
>> *To:* Chang, Hsi <xz...@iu...>
>> *Cc:* gmo...@li... <gmo...@li...>
>> *Subject:* [External] Re: [Gmod-ajax] Inquiry
>>
>> You don't often get email from sc...@sc.... Learn why this is
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>> This message was sent from a non-IU address. Please exercise caution when
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>>
>> Hi,
>>
>> Can you give us a little more information? Is this in a publicly
>> available JBrowse instance? Can you give us a URL? When you write "Select
>> the region", are you searching for something and it isn't working?
>>
>> Thanks,
>> Scott
>>
>>
>> On Mon, May 23, 2022 at 10:25 AM Chang, Hsi <xz...@iu...> wrote:
>>
>> I don't know I am not available select the region based on the gene for
>> mm10 genome, but the hg38 working fine.
>> _______________________________________________
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>>
>> --
>> ------------------------------------------------------------------------
>> Scott Cain, Ph. D.                                                  scott
>> at scottcain dot net
>> GMOD Project Manager (http://gmod.org/
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>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                                  scott
> at scottcain dot net
> GMOD Project Manager (http://gmod.org/)
> 216-392-3087
> WormBase Developer (http://wormbase.org/)
> Alliance of Genome Resources Group Leader (http://alliancegenome.org/)
> VirusSeq Project Manager (https://virusseq-dataportal.ca/)
> Human Cancer Models Initiative Project Manager (
> https://hcmi-searchable-catalog.nci.nih.gov/)
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