Hi Scott,
Thanks for your prompt response. The MySQL is on a different server from where gbrowse is installed and we are able to connect to MySQL fine.. the modules are also installed.
Thanks
Kiran
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________________________________
From: Scott Cain <sc...@sc...>
Sent: Friday, April 29, 2022, 6:10 PM
To: Rajaya, Kiran <ra...@bc...>; Gbrowse (E-mail) <gmo...@li...>
Cc: he...@gm... <he...@gm...>
Subject: Re: gbrowse2
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Hi Kiran,
Oh, that could be difficult to debug. I'll start with suggesting that you move to JBrowse 1 (quite stable) or JBrowse 2 (active development with new features getting added often). http://jbrowse.org/<https://urldefense.proofpoint.com/v2/url?u=http-3A__jbrowse.org_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=hmi0kfFk5a_xIUXLEhr_Ig&m=ZrqfUL5Wc7zcI-cWuUp8As2kv--PheEQTN5B8ieXJvL1DK-vfVzJUZGnNym2IScA&s=XIIakvN9-mX88hFwKeTtLHUhV8huao67UvIqVIjAhFw&e=>
I'll start with this: is the mysql database on the same machine as the GBrowse 2 install, and are there any useful error messages in the apache error log? Are the DBI and DBD::mysql perl modules installed?
Scott
On Fri, Apr 29, 2022 at 3:33 PM Rajaya, Kiran <ra...@bc...<mailto:ra...@bc...>> wrote:
Hi,
I have question about gbrowse2 that we have setup on a new server since we migrated. We have setup everything however the gbrowse is not able to call the MySQL database. How can I check what is missing to make the connection successfully?
Thanks!
Kiran
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