Re: [Gmod-ajax] Regarding JBrowse

[Garrett S. <ste...@gm...>]

Hello Uday,

For 1, you can add multiple tracks inside the "tracks" array. You can see
one of our example configs here:
https://github.com/GMOD/jbrowse-components/blob/d95dc2cc595c51bbfd7ed363b5e7c2b6b48a0eaa/test_data/volvox/config.json#L88-L127
.

For 2, what specification of GFF is your file using? We support GFF3, and
if you have GFF2 you might be able to get it to work using the GTF adapter
type. Another thing to check is that your reference sequence names match.
>From your screenshot it looks like your reference sequence file uses the
name "chr_001". Does this match the name in your GFF file? If not, you will
need to either change the names to match or set up reference name aliasing
<https://jbrowse.org/jb2/docs/config_guide/#configuring-reference-name-aliasing>
.

Best,
Garrett

On Thu, Jan 13, 2022 at 8:49 AM Uday Sai Reddy Ambati via Gmod-ajax <
gmo...@li...> wrote:

> Hello,
>
> I have a few questions regarding JBrowse. Can you please help me
>
> 1) I am attaching a screenshot of the configuration file, Is there any way
> that I can  add multiple tracks to the config file so that I can select any
> of the tracks that I want, If so please let me know how to do it.
>
> 2) I am trying to add a gff file type, not a gff3 type to the config file,
> but I cannot see anything regarding that on the screen. I am attaching a
> screenshot of that too. Is there anything wrong with this file type?
>
> Please let me know the solution for these issues. Thank you for your time.
>
> Thank you,
> Uday Ambati.
>
>
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