Re: [GMOD-devel] gmod_bulk_load_gff3.pl

[Scott C. <sc...@sc...>]

Oh, I haven't touched this code in a very long time. Did you try what it
suggested (ie, changing the 'defined(@array)' to just '@array')?

If that doesn't work, I'll have to set up a fresh dev environment to work
on this, which may take a little time.  Are you by any chance using Tripal
too? That might be a "faster" path to getting your data into the database.

Scott


On Wed, Jan 5, 2022 at 10:04 AM leben <821...@ca...> wrote:

> When I use this script gmod_load_bulk_gff3.pl , I get an error,like this,
>
> Can't use 'defined(@array)' (Maybe you should just omit the defined()?) at
> /usr/local/share/perl/5.26.1/Bio/GMOD/DB/Adapter.pm line 498.
> Compilation failed in require at /usr/local/bin/gmod_bulk_load_gff3.pl
> line 13.
> BEGIN failed--compilation aborted at /usr/local/bin/gmod_bulk_load_gff3.pl
> line 13.
>
> This is a perl compilation kernel error that disables defined(@array)
>
> I tried to change Perl to an older version, but it still didn't work. Is
> there a solution?
>
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-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                                  scott
at scottcain dot net
GMOD Project Manager (http://gmod.org/)
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