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[Gmod-ajax] Multiple Jbrowse on same server issue
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From: Justin E. <jus...@or...> - 2021-10-15 19:10:37
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Hello,<br>
<br>
Hope this is the appropriate place to ask this, but I'm having an
issue with having multiple Jbrowse (1.16.10) instances running on
the same apache server. They are in separate vhosts though and being
served from different domains.<br>
<br>
I have had one setup for almost a year now and it works fine.
However, I am now trying to set up another one for a different
species, and I thought it would be easiest to just do a fresh
install in a new directory. However, after unzipping and running
./setup.sh, instead of seeing this screen:<br>
<img src="cid:par...@or..." alt="" width="496" height="271"><br>
<br>
I see this:<br>
<img src="cid:par...@or..." alt="" width="876" height="264"><br>
<br>
Like it is already loaded with some data, even though I haven't
added any yet. Also, the location in the dropdown "Sh6" appears to
be from the data loaded for the other species (Salvia hispanica -
chia).<br>
<br>
I've tried to go ahead and load my reference data (this new one is
for rice), and I get the "Reference sequence" track but it always
has "No sequence available" and the "loc=" still references the
"Sh6" instead of "Chr1".<br>
<br>
I've also found that if I follow the exact same steps, but on a
different machine that doesn't already have a jbrowse instance
installed, it works exactly as I expect, so I'm pretty sure it is
trying to read the wrong data for some reason.<br>
<br>
For now, both sites are restricted to only be visible from some IP
addresses, but I can open it up temporarily if it would help.<br>
<br>
Also, just in case it helps, here are the relevant bits of the
Apache vhost entries for both:<br>
The one that works:<br>
/etc/httpd/conf.d/salvia.conf<br>
<pre> Alias /jbrowse "/data/www/jbrowse/jbrowse"</pre>
<pre> <Directory "/data/www/jbrowse/jbrowse"></pre>
<pre> AllowOverride All</pre>
<pre> Require all granted</pre>
<pre> </Directory></pre>
<br>
The one that doesn't work:<br>
/etc/httpd/conf.d/panoryza-ssl.conf<br>
<pre> Alias /jbrowse "/data/www/panoryza/jbrowse"</pre>
<pre> <Directory "/data/www/panoryza/jbrowse"></pre>
<pre> AllowOverride All</pre>
<pre> Require all granted</pre>
<pre> </Directory></pre>
<br>
<br>
I would appreciate any help in figuring out what I am doing wrong or
how to fix this.<br>
<br>
Thanks,<br>
Justin Elser<br>
<pre class="moz-signature" cols="72">--
**********************************************************
* *
* Justin Elser *
* Computational Biology Post Doc *
* Dept. of Botany and Plant Pathology *
* Oregon State University *
* *
* email: <a class="moz-txt-link-abbreviated" href="mailto:el...@sc...">el...@sc...</a> *
* internet: <a class="moz-txt-link-abbreviated" href="http://www.science.oregonstate.edu/~elserj">www.science.oregonstate.edu/~elserj</a> *
* *
**********************************************************
</pre>
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