[Gmod-ajax] VL: JBowse

[Jenni T. (TAU) <jen...@tu...>]

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Lähettäjä: Jenni Tolppanen (TAU) <jen...@tu...>
Lähetetty: torstai 6. toukokuuta 2021 9.31
Vastaanottaja: Scott Cain <sc...@sc...>
Aihe: VS: [Gmod-ajax] JBowse

Hi,

Thank you for the quick response!

What should I do if I want BED files? And is it possible to obtain BED file from all the genome at once?

-Jenni
________________________________
Lähettäjä: Scott Cain <sc...@sc...>
Lähetetty: torstai 22. huhtikuuta 2021 23.09
Vastaanottaja: Jenni Tolppanen (TAU) <jen...@tu...>
Kopio: gmo...@li... <gmo...@li...>
Aihe: Re: [Gmod-ajax] JBowse

Hi Jenni,

That is very strange--I've never seen that dialog box look like that. There are two options in that box: Visible region or whole reference sequence which correspond to the two circles you can check off (with visible region selected by default and selected in the picture you sent). Even though the text is very "smooshed" the dialog box should still work, so you can select either of the circles and click "Save" and it will save a GFF3 file with the data to your computer.

Please let us know if you have any problems with this,
Scott


On Thu, Apr 22, 2021 at 12:42 PM Jenni Tolppanen (TAU) <jen...@tu...<mailto:jen...@tu...>> wrote:
Hi,

I have a problem when I try to download data from the browser. For example I would like to get all common putative enhancers. Attached picture shows the problem. What should I do?

Yours faithfully,

Jenni Tolppanen
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Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research