Re: [Gmod-ajax] Installing SashimiPlot for JBrowse1

[Colin <col...@gm...>]

You may need to re-run setup.sh after downloading SashimiPlot to the
plugins/SashimiPlot folder

Another faq entry to help explain...
https://jbrowse.org/docs/faq.html#how-do-i-use-plugins-with-jbrowse

Hope that helps :)
-Colin

On Thu, Apr 29, 2021 at 8:48 PM Hans Vasquez-Gross via Gmod-ajax <
gmo...@li...> wrote:

> Hi JBrowse team,
>
> I am trying to install SashimiPlot plugin in JBrowse. I already have
> another plugin enabled on JBrowse (VariantEffectPlugin), so plugins are
> generally working. I performed the same steps to enable it.
>
> 1) In the plugins folder, cloned the git repo
> 2) Renamed git folder from sashimiplot to SashimiPlot
> 3) Added configuration to jbrowse.conf
>
> [ plugins.SashimiPlot ]
> location = plugins/SashimiPlot
> [ plugins.VariantEffectPlugin ]
> location = plugins/VariantEffectPlugin
>
> 4) Added track configuration to tracks.conf
>
> [tracks.pachon_adult_ovary_rep2_bam]
> urlTemplate=pachon_adult_ovary_n7.rep2.sorted.bam
> storeClass=JBrowse/Store/SeqFeature/BAM
> type=SashimiPlot/View/Track/Sashimi
> chunkSizeLimit = 50000000
> useXS = true
> category = Sashimi
> label = Pachon Adult Ovary rep2 sashimi
>
>
> The result is the following screenshot.
> [image: Screenshot from 2021-04-29 17-40-44.png]
>
>
> Did I do something wrong during the installation?
>
> Thank you,
> -Hans
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