Re: [Gmod-ajax] Basic question: force labels on dense tracks JBrowse1?

[Hans Vasquez-G. <hav...@uc...>]

Hi Colin,

When we get our new webserver, I'll be setting it up so that we will have a
public instance. For now though, it requires connecting via university VPN
to load the website.
Here is a screenshot of the track config of the M-10 Variant (non-labeled).

[image: Screen Shot 2021-03-29 at 8.58.45 AM.png]


Best,
-Hans



On Sun, Mar 28, 2021 at 10:57 PM Colin <col...@gm...> wrote:

> The attribute style.labelScale=0.01 should be able to be used for forcing
> VCF labels to be drawn on dense tracks (e.g.
> https://jbrowse.org/docs/faq.html#my-track-doesn-t-display-the-gene-names-but-i-expected-it-to-why-not
> )
>
> The value 0.01 corresponds to forcing labels to be drawn when you are
> zoomed in closer than about 100,000bp view window or so (e.g.
> 1000px/0.01pxPerBp=100,000bp)
>
> If you have an instance we can see that can be seen or any custom config,
> maybe that would help?
>
> -Colin
>
> On Fri, Mar 26, 2021 at 8:07 PM Hans Vasquez-Gross via Gmod-ajax <
> gmo...@li...> wrote:
>
>> Hi all,
>>
>> I want to force labels on VCF tracks. I found this on a previous email:
>>
>> "style":{"labelScale": 0.01}
>> However, I dont use trackList.json for my VCF configurations, I use
>> tracks.conf. I tried setting it as style.labelScale = 0.01, but the labels
>> are still not being drawn on the track for dense tracks.
>>
>> Thank you,
>> -Hans
>>
>>
>> _______________________________________________
>> Gmod-ajax mailing list
>> Gmo...@li...
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>>
>

-- 
Hans Vasquez-Gross
<http://dubcovskylab.ucdavis.edu/lab-member/hans-vasquez-gross>
PhD Candidate
Dubcovsky Website - http://dubcovskylab.ucdavis.edu/
Department of Plant Science
University of California at Davis
Email: hav...@uc...
Skype: hansvg.ucd