Re: [Gmod-ajax] jbrowse_help

[Colin <col...@gm...>]

I am maybe guessing, but maybe you are trying to view your rice GFF on the
volvox (e.g. our demo's) FASTA assembly? The tracks may appear empty if the
chromosome names from the GFF do not match the chromosome names from the
FASTA (which would happen with an assembly mismatch e.g. volvox instead of
rice being viewed here)

-Colin

On Thu, Mar 18, 2021 at 2:41 PM Scott Cain <sc...@sc...> wrote:

> Hi anubhav,
>
> Can you tell us what you did to prepare the GFF data, and what the track
> configuration looks like?  If this site is available somewhere on the web
> that we can get to, that would probably help too.
>
> Also, I know you are fairly new to jbrowse; let me suggest that you might
> want to look at jbrowse 1, as it is more mature (I know I just steered you
> away from GBrowse because it’s “too mature”). It all depends on what you
> want the browser for.
>
> Scott
>
> > On Mar 18, 2021, at 10:29 AM, anubhav roy <anu...@gm...>
> wrote:
> >
> > 
> > I have loaded Rice gff3 file but in GUI no genes or transcripts or any
> information is shown.why?
> > I want genes in my gff3 file to be shown in GUI. kindly help.
> > screenshot is Attached.
> > <jbrowse.png>
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