Re: [Gmod-ajax] OnClick open an URL in a new tab

[Colin <col...@gm...>]

This documentation page could help
https://jbrowse.org/docs/mouse_configs.html#customizing-left-click-behavior-1


Could also use

         "onClick"  : {
             "label": "search at NCBI",
             "action": "newWindow",
             "url": "http://www.ncbi.nlm.nih.gov/gquery/?term={name}"
         }

Which should open it up in a new window


-Colin

On Fri, Nov 27, 2020 at 12:01 AM Michał T. Lorenc <m.t...@gm...>
wrote:

> Hi,
> How Is it possible to allow the user a left-click on a gene which will
> trigger to open for example this URL *https://www.ncbi.nlm.nih.gov/protein/
> <https://www.ncbi.nlm.nih.gov/protein/>XP_019258550.1/*? If not what
> other alternatives exist?
>
>
> The data is stored in this  GFF3:
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> *##gff-version 3##sequence-region chr01_pilon_pilon 1
> 141847987chr01_pilon_pilon       transdecoder    gene    410672  411597  .
>       +       .       ID=gene.5.0;chr01_pilon_pilon       transdecoder
>  mRNA    410672  411597  .       +       .
> ID=gene.5.0.0.p1;Name=XP_019258550.1;Note=uncharacterized protein
> LOC109236786 isoform X2;Parent=gene.5.0chr01_pilon_pilon       transdecoder
>    exon    410672  410798  .       +       .
> ID=gene.5.0.0.p1.exon1;Parent=gene.5.0.0.p1chr01_pilon_pilon
> transdecoder    exon    410939  411205  .       +       .
> ID=gene.5.0.0.p1.exon2;Parent=gene.5.0.0.p1chr01_pilon_pilon
> transdecoder    exon    411326  411597  .       +       .
> ID=gene.5.0.0.p1.exon3;Parent=gene.5.0.0.p1chr01_pilon_pilon
> transdecoder    CDS     411087  411205  .       +       0
> ID=cds.gene.5.0.0.p1;Parent=gene.5.0.0.p1chr01_pilon_pilon
> transdecoder    CDS     411326  411596  .       +       1
> ID=cds.gene.5.0.0.p1;Parent=gene.5.0.0.p1chr01_pilon_pilon
> transdecoder    five_prime_UTR  410672  410798  .       +       .
> ID=gene.5.0.0.p1.utr5p1;Parent=gene.5.0.0.p1chr01_pilon_pilon
> transdecoder    five_prime_UTR  410939  411086  .       +       .
> ID=gene.5.0.0.p1.utr5p2;Parent=gene.5.0.0.p1chr01_pilon_pilon
> transdecoder    three_prime_UTR 411597  411597  .       +       .
> ID=nbis_NEW-three_prime_utr-1647;Parent=gene.5.0.0.p1chr01_pilon_pilon
>   AUGUSTUS        gene    548726  549814  0.05    -       .
> ID=chr01.g50chr01_pilon_pilon       AUGUSTUS        mRNA    548726  549814
>  0.05    -       .       ID=chr01.g50.t1;Name=*XP_009763891.1;*Note=probable
> peroxygenase 4%2C partial;Parent=chr01.g50*
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> *chr01_pilon_pilon       AUGUSTUS        TSS     549814  549814  .       -
>       .       ID=tss-50;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>        exon    548726  549025  0.75    -       .
> ID=nbis_NEW-exon-508444;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>        exon    549117  549231  0.75    -       .
> ID=nbis_NEW-exon-508445;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>        exon    549446  549814  0.75    -       .
> ID=nbis_NEW-exon-508446;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>        CDS     548872  549025  0.75    -       1
> ID=chr01.g50.t1.cds;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>    CDS     549117  549231  0.87    -       2
> ID=IDmodified-cds-835457;Parent=chr01.g50.t1chr01_pilon_pilon
> AUGUSTUS        CDS     549446  549491  0.87    -       0
> ID=IDmodified-cds-835458;Parent=chr01.g50.t1chr01_pilon_pilon
> AUGUSTUS        five_prime_utr  549492  549814  0.37    -       .
> ID=five_prime_utr-58;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>      intron  549026  549116  0.88    -       .
> ID=intron-212;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>  intron  549232  549445  0.87    -       .
> ID=intron-213;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>  start_codon     549489  549491  .       -       0
> ID=start_codon-50;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>  stop_codon      548872  548874  .       -       0
> ID=stop_codon-50;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>  three_prime_utr 548726  548871  0.17    -       .
> ID=three_prime_utr-52;Parent=chr01.g50.t1chr01_pilon_pilon       AUGUSTUS
>      transcription_end_site  548726  548726  .       -       .
> ID=transcription_end_site-50;Parent=chr01.g50.t1*
> ...
>
> Thank you in advance,
>
> Mic
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