Re: [Gmod-ajax] No exons and introns present in gene model​

[Colin <col...@gm...>]

One thing to try is to use --trackType CanvasFeatures

The default, with no trackType specified, is HTMLFeatures

Here is a short summary of HTMLFeatures vs CanvasFeatures

http://gmod.org/wiki/JBrowse_FAQ#What_is_the_difference_between_CanvasFeatures_and_HTMLFeatures.3F

If you are interested in configuring HTMLFeatures properly you might add
--type mRNA instead of --type gene, because HTMLFeatures works properly
when loaded at the transcript level, CanvasFeatures can be loaded at the
gene level though


-Colin

On Wed, Sep 16, 2020 at 10:43 AM 李会 <lih...@ma...> wrote:

> Dear JBrowse staff,
>
>
> We are using Jbrowse to configure the structural characteristics of our
> genome, but we found that the exons and introns are not present in the
> gene model. GFF format, configuration file and commands used in our
> program are summarized in the attachment, including problems we can not solve.
> Please check the attached file and help us to get the correct gene model
> (configuration) with exons and introns.
>
>
>
> Sincerely,
>
> Hui Li
>
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