Re: [Gmod-ajax] Perl lib version question

[Colin <col...@gm...>]

There have been a couple people experiencing this lately. I am not exactly
sure why, maybe it is related people who have older versions of jbrowse
upgrading to perl 5.30+.

JBrowse generally installs all it's perl dependencies to a folder inside
JBROWSE_ROOT/extlib

I would try rm -rf extlib, maybe also ~/.cpanm and ~/.cpan, then re-run
setup.sh

Here is a chat log of a user on our chat that also did these steps but it
was  on macOS

> * nuke all traces of perl in /User (brew, .cpan, .cpanm etc.)
> * `sudo installer -pkg
/Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg
-target` - allows  Extern_H compile problem to  pass
> * use `cpan` to `install JSON::XS` (for some reason the dependency won't
install during setup.sh)
> * run `setup.sh`



-Colin

On Wed, Jun 3, 2020 at 7:37 PM Zhiliang Hu <hu...@an...> wrote:

> When I tried to load data to JBrowse, I got the following complain:
>
> Perl lib version (5.16.3) doesn't match executable
> '/home/apache/doc/jbrowse/bin/flatfile-to-json.pl' version (v5.30.0) at
> /usr/lib64/perl5/Config.pm line 60.
> Compilation failed in require at /usr/lib64/perl5/lib.pm line 6.
>
> In cpan I did "reload cpan" and "install lib" and it says:
>
>    lib is up to date (0.63)
>
> I am at a lost as how to update my "perl lib". Any advice please?
>
> Zhiliang
>
>
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