[Gmod-ajax] Max height reached with BAM files

[Michał T. L. <m.t...@gm...>]

Hi all,
After HiSAT2 I ran MarkDuplicates and removed aligned reads with lower than
40 quaily score but still, I get Max height reached.

[image: Screen Shot 2019-09-11 at 12.23.00 AM.png]

Is there a way to change the aligned reads so there do not trigger  Max
height reached and covering the whole gene region?

Thank you in advance

Michal