From: Michał T. L. <m.t...@gm...> - 2019-08-09 02:49:57
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Hi, I have below a subset of a GFF3 file which contains different DbXrefs, InterProScan accession numbers and GO terms. However, some lines of the GFF3 are missing InterProScan accession numbers and GO terms. However, all lines contain DbXrefs. Here (https://www.uniprot.org/docs/dbxref) is a list of all possible dbxrefs. How is possible to allow the user to click in JBrowse on a feature and get options to be redirected to DbXrefs, InterProScan and ontogy? - NbV1Ch09 interpo domain 71124892 71125030 . . . Name=RNase_HI_RT_Ty1; *Dbxref=CDD*:cd09272;Note=CDD - NbV1Ch14 interpo domain 93274595 93274797 . . . Name=Ribonuclease H superfamily;*Dbxref=Gene3D*:G3DSA:3.30.420.10;Note=Gene3D;_Accession= *IPR036397*;Ontology_term=*GO:0003676* - NbV1Ch16 interpo domain 66731787 66732421 . . . Name=Deoxyxylulose-5-phosphate synthase;*Dbxref=Hamap* :MF_00315;Note=Hamap;_Accession=*IPR005477*;Ontology_term= *GO:0008661,GO:0016114* - NbV1Ch09 interpo domain 71124160 71124256 . . . Name=consensus disorder prediction;*Dbxref=MobiDBLite*:mobidb-lite;Note=MobiDBLite - NbV1Ch01 interpo domain 175378467 175379194 . . . Name=AP-1/2/4 complex subunit beta;*Dbxref=PIRSF*:PIRSF002291;Note=PIRSF;_Accession= *IPR016342*;Ontology_term=*GO:0015031,GO:0030276* - NbV1Ch07 interpo domain 107909842 107909860 . . . Name=Recoverin family signature;*Dbxref=PRINTS*:PR00450;Note=PRINTS - NbV1Ch09 interpo domain 71123771 71123905 . . . Name=gag-polypeptide of LTR copia-type;*Dbxref=Pfam*:PF14223;Note=Pfam - NbV1Ch03 interpo domain 33983707 33983721 . . . Name=Trp-Asp (WD) repeats signature.;*Dbxref=ProSitePatterns* :PS00678;Note=ProSitePatterns;_Accession=*IPR019775* - NbV1Ch09 interpo domain 71124317 71124413 . . . Name=Integrase, catalytic core;*Dbxref=ProSiteProfiles* :PS50994;Note=ProSiteProfiles;_Accession=*IPR001584*;Ontology_term= *GO:0015074* - NbV1Ch17 interpo domain 30522620 30522886 . . . Name=C1.5: HAD, Beta-PGM, Phosphatase Like;*Dbxref=SFLD*:SFLDG01129;Note=SFLD - NbV1Ch03 interpo domain 33983723 33983761 . . . Name=WD40 repeat; *Dbxref=SMART*:SM00320;Note=SMART;_Accession=*IPR001680*;Ontology_term= *GO:0005515* - NbV1Ch09 interpo domain 71124311 71124414 . . . Name=Ribonuclease H-like superfamily;*Dbxref=SUPERFAMILY* :SSF53098;Note=SUPERFAMILY;_Accession=*IPR012337* - NbV1Ch01 interpo domain 157928056 157928088 . . . Name=PPR: pentatricopeptide repeat domain;*Dbxref=TIGRFAM* :TIGR00756;Note=TIGRFAM;_Accession=*IPR002885* Thank you in advance, Michal |