Re: [Gmod-ajax] Description

[Michał T. L. <m.t...@gm...>]

Hi Scott,
Thank you it worked for GFF3 files but it does not work for the below BED
file:














*      {         "category" : "iii. ChIP-seq",         "compress" : 1,
   "key" : "QldK9.bed",         "label" : "QldK9.bed",         "storeClass"
: "JBrowse/Store/SeqFeature/NCList",         "style" : {
"className" : "feature",            "label" : false         },
 "trackType" : "CanvasFeatures",         "type" : "CanvasFeatures",
 "urlTemplate" : "tracks/QldK9.bed/{refseq}/trackData.jsonz"      },*

What did I miss?

Thank you in advance,

Michal




On Wed, Jul 31, 2019 at 3:52 PM Scott Cain <sc...@sc...> wrote:

> Hi Michal,
>
> Yes, you can suppress the feature labels by adding "label" : false to the
> style section of the trackList.json config section.
>
> For adding a link for a feature, it is moderately more complicated and
> depends on where you want it to link to.  This section of the docs will get
> you started:
>
>
> http://jbrowse.org/docs/mouse_configs.html#customizing-left-click-behavior-1
>
> but you might need a javascript callback to get it working.  If it's not
> obvious, please respond and give a description of what you'd like the link
> to do and we can give you more help.
>
> Scott
>
>
> On Tue, Jul 30, 2019 at 10:03 PM Michał T. Lorenc <m.t...@gm...>
> wrote:
>
>> Hi,
>> I have a GFF3 file with SNPs (please see below) and I loaded it into
>> Jbrowse/Apollo with *flatfile-to-json.pl <http://flatfile-to-json.pl>
>> --gff /efs/apollo/snps.fasta.m_snp.gff3 --compress --trackLabel "SNPs"
>> --out /efs/apollo/ * .
>>
>>
>>
>> *##gff-version 3NbV1Ch01        SGSautoSNP      SNP     1245    1245    .
>>       .       .
>> Name=NbV1ChF00000000000000000001;ID=NbV1ChF00000000000000000001;Contig
>> name=NbV1Ch01;SNP score=5;SNP pos. on scaffold=1245;Genotype
>> L=26*T;Genotype Q=5*C;Changes=C/T*
>> *NbV1Ch01        SGSautoSNP      SNP     1303    1303    .       .
>> .
>> Name=NbV1ChF00000000000000000002;ID=NbV1ChF00000000000000000002;Contig
>> name=NbV1Ch01;SNP score=4;SNP pos. on scaffold=1303;Genotype
>> L=18*T;Genotype Q=4*A;Changes=A/T*
>>
>> [image: image.png]
>>
>> How is it possible to hide the SNP description and only show it when the
>> user mouse over or click on the SNP? Additionally, when the SNP description
>> appears would it be possible to add a click event to be redirected to a new
>> page?
>>
>> Thank you in advance,
>>
>> Best wishes,
>>
>> Michal
>>
>>
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>>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain
> dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>