From: Michał T. L. <m.t...@gm...> - 2019-07-25 14:53:42
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Hi I ran InterProScan and I got GFF3, TSV and XML. It appears that the InterProScan's GFF3 file does not contain any chromosome names: ``` *##gff-version 3##feature-ontology http://song.cvs.sourceforge.net/viewvc/song/ontology/sofa.obo?revision=1.269 <http://song.cvs.sourceforge.net/viewvc/song/ontology/sofa.obo?revision=1.269>##interproscan-version 5.36-75.0##sequence-region g109343.t1 1 1358g109343.t1 . polypeptide 1 1358 . + . ID=g109343.t1;md5=3e908dc966fefe367e64dc9d98b0d3abg109343.t1 ProSiteProfiles protein_match 628 724 18.261 + . date=20-07-2019;Target=g109343.t1 628 724;Ontology_term="GO:0015074";ID=match$1_628_724;signature_desc=Integrase catalytic domain profile.;Name=PS50994;status=T;Dbxref="InterPro:IPR001584"g109343.t1 SUPERFAMILY protein_match 586 624 4.19E-5 + . date=20-07-2019;Target=g109343.t1 586 624;Ontology_term="GO:0003676","GO:0008270";ID=match$2_586_624;Name=SSF57756;status=T;Dbxref="InterPro:IPR036875"g109343.t1 SUPERFAMILY protein_match 622 725 4.93E-29 + . date=20-07-2019;Target=g109343.t1 622 725;ID=match$3_622_725;Name=SSF53098;status=T;Dbxref="InterPro:IPR012337"g109343.t1 ProSiteProfiles protein_match 278 294 9.636 + . date=20-07-2019;Target=g109343.t1 278 294;Ontology_term="GO:0003676","GO:0008270";ID=match$4_278_294;signature_desc=Zinc finger CCHC-type profile.;Name=PS50158;status=T;Dbxref="InterPro:IPR001878"g109343.t1 SMART protein_match 600 616 0.36 + . date=20-07-2019;Target=g109343.t1 600 616;Ontology_term="GO:0003676","GO:0008270";ID=match$5_600_616;Name=SM00343;status=T;Dbxref="InterPro:IPR001878"g109343.t1 SMART protein_match 278 294 6.3E-4 + . date=20-07-2019;Target=g109343.t1 278 294;Ontology_term="GO:0003676","GO:0008270";ID=match$5_278_294;Name=SM00343;status=T;Dbxref="InterPro:IPR001878"g109343.t1 Pfam protein_match 82 216 1.2E-24 + . date=20-07-2019;Target=g109343.t1 82 216;ID=match$6_82_216;signature_desc=gag-polypeptide of LTR copia-type;Name=PF14223;status=T* ``` Is there a solution how to load InterProScan results as a track into JBrowse? Thank you in advance, Michal |