[Gmod-ajax] JBrowse 1.16.4 released

[Colin <col...@gm...>]

Hello all,
This is late after the fact, but I missed sending out the JBrowse 1.16.4
announcement, so I wanted to send one out. JBrowse 1.16.5 was also released
today, and you will receive that announcement too.

Here are the notes


   - JBrowse-1.16.4.zip
   <https://github.com/GMOD/jbrowse/releases/download/1.16.4-release/JBrowse-1.16.4.zip>
-
   minified release
   - JBrowse-1.16.4-dev.zip
   <https://github.com/GMOD/jbrowse/archive/1.16.4-release.zip> - use this
   if you modify jbrowse source code or use plugins
   - JBrowse-1.16.4-desktop-win32-x64.zip
   <https://github.com/GMOD/jbrowse/releases/download/1.16.4-release/JBrowse-1.16.4-desktop-win32-x64.zip>
   - JBrowse-1.16.4-desktop-linux-x64.zip
   <https://github.com/GMOD/jbrowse/releases/download/1.16.4-release/JBrowse-1.16.4-desktop-linux-x64.zip>
   - JBrowse-1.16.4-desktop-darwin-x64.zip
   <https://github.com/GMOD/jbrowse/releases/download/1.16.4-release/JBrowse-1.16.4-desktop-darwin-x64.zip>

<http://jbrowse.org/blog/#minor-improvements>Minor improvements

   -

   Added indexedFeatures tracklist attribute for GFF3Tabix track types
   which controls the feature types from a GFF3Tabix file that are indexed.
   Thanks to @loraine-gueguen <https://github.com/loraine-gueguen> for the
   idea and implementation! (issue #1337
   <https://github.com/gmod/jbrowse/pull/1337>, @loraine-guegen
   <https://github.com/loraine-guegen>)
   -

   Added inferHTMLSubfeatures which automatically creates multiple mRNA
   transcripts from a single gene parent feature. Thanks to @abretaud
   <https://github.com/abretaud> for the idea and implementation! Note that
   this is enabled by default now (issue #1343
   <https://github.com/gmod/jbrowse/pull/1343>, issue #1340
   <https://github.com/gmod/jbrowse/pull/1340>)
   -

   Updated jbrowse.org website to run entirely off amazon S3 (issue #1347
   <https://github.com/gmod/jbrowse/pull/1347>, issue #1348
   <https://github.com/gmod/jbrowse/pull/1348>)

<http://jbrowse.org/blog/#bug-fixes>Bug fixes

   -

   Added better error reporting to GFF3Tabix tracks for if a parsing error
   occured. Thanks to @nathanhaigh <https://github.com/nathanhaigh>for
   reporting (@cmdcolin <https://github.com/cmdcolin>)
   -

   Added fix for VCF that don't contain alternative alleles (@cmdcolin
   <https://github.com/cmdcolin>)
   -

   Added better error handling if there is a case where a tabix file is
   loaded that is on a genome longer than 2^29. CSI indexes are needed for
   this. Old versions of tabix which hadn't invented CSI would generate
   invalid tabix indexes in this case. Thanks to Hans Vasquez-Gross for
   reporting (@cmdcolin <https://github.com/cmdcolin>)
   -

   Fixed link in documentation. Thanks @agarciamontoro
   <https://github.com/agarciamontoro> (issue #1341
   <https://github.com/gmod/jbrowse/pull/1341>)
   -

   Fixed issue with ucsc-to-json.pl creating subfeatures with the wrong
   strand. Thanks to @sachalau <https://github.com/sachalau> for finding
   and fixing (issue #1346 <https://github.com/gmod/jbrowse/pull/1346>)