[Gmod-ajax] fasta setup

[Zhihao D. <zhi...@gm...>]

Dear Jbrowse developers,

Thanks for developing Jbrowse. I've been trying to setup an instance
following the instructions. I am able to see the browser page, but haven't
managed to get the reference sequence right.

I've downloaded a couple of fasta files just for testing from the
following link
ftp://ftp.ensembl.org/pub/release-96/fasta/homo_sapiens/dna/

I then run the following two commands:
bin/prepare-refseqs.pl --fasta Homo_sapiens.GRCh38.dna_rm.chromosome.1.fa.gz
bin/prepare-refseqs.pl --fasta Homo_sapiens.GRCh38.dna_rm.chromosome.2.fa.gz

This is  trackList.json generated:
{
   "formatVersion" : 1,
   "tracks" : [
      {
         "category" : "Reference sequence",
         "chunkSize" : 20000,
         "key" : "Reference sequence",
         "label" : "DNA",
         "seqType" : "dna",
         "storeClass" : "JBrowse/Store/Sequence/StaticChunked",
         "type" : "SequenceTrack",
         "urlTemplate" : "seq/{refseq_dirpath}/{refseq}-"
      }
   ]
}

On the browser page, I have only contig 1 in the dropdown list.

Could anyone point me to the right directions here?

Thank you,
Zhihao