Re: [Gmod-ajax] Issues wrt JBrowse

[Scott C. <sc...@sc...>]

Hi Divya,

There is a configuration parameter to change the number of items displayed
in that dropdown menu.  See:


http://gmod.org/wiki/JBrowse_Configuration_Guide#Reference_Sequence_Selector_Configuration

for more information.  I would suggest that you either want to suppress
that menu altogether and make sure name completion works (by running
generate_names.pl) or leave the limit of 30 items in place.  A dropdown
menu with 3000 items is worse than useless.  To suppress the menu, add
refSeqDropdown = false to the jbrowse.conf file.  A final option would be
to list the contigs by size if this were a genome with many contigs (but
some nice large ones), but since this is a transcriptome, I don't think
that option makes much sense.

Please feel free to reply to the list if you have any more questions,
Scott


On Fri, Feb 22, 2019 at 9:44 AM Divya Chanda via Gmod-ajax <
gmo...@li...> wrote:
>
> Hi,
> I have been given a website work which was started by someone else and
struck in the middle of something.
> The search bar displays only 32 contigs of a camel species whereas we
have more than30000 values corressponding to the same.
> Please let me know can we show more than 30 values in the dropdown menu?
> If yes, please let me know  which files need to be changed or linked .
> For reference the image is attached showing 30 reference sequences.
>
>
> _______________________________________________
> Gmod-ajax mailing list
> Gmo...@li...
> https://lists.sourceforge.net/lists/listinfo/gmod-ajax



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------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research