From: Colin <col...@gm...> - 2019-02-21 02:19:31
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Hello all, I am happy to announce JBrowse 1.16.3. This release is important in order to address a change that was made upstream in BioPerl where some modules that JBrowse uses were removed from the core BioPerl distribution. If you are stuck with an older version of JBrowse please see https://github.com/GMOD/jbrowse/issues/1313 for a workaround, but otherwise this version of JBrowse has such a workaround built in to it. If there are any questions about this, let me know. Otherwise, happy browsing! - JBrowse-1.16.3.zip <https://github.com/GMOD/jbrowse/releases/download/1.16.3-release/JBrowse-1.16.3.zip> - minified release - JBrowse-1.16.3-dev.zip <https://github.com/GMOD/jbrowse/archive/1.16.3-release.zip> - use this if you modify jbrowse source code or use plugins - JBrowse-1.16.3-desktop-win32-x64.zip <https://github.com/GMOD/jbrowse/releases/download/1.16.3-release/JBrowse-1.16.3-desktop-win32-x64.zip> - JBrowse-1.16.3-desktop-linux-x64.zip <https://github.com/GMOD/jbrowse/releases/download/1.16.3-release/JBrowse-1.16.3-desktop-linux-x64.zip> - JBrowse-1.16.3-desktop-darwin-x64.zip <https://github.com/GMOD/jbrowse/releases/download/1.16.3-release/JBrowse-1.16.3-desktop-darwin-x64.zip> Blogpost http://jbrowse.org/blog/2019/02/20/jbrowse-1-16-3.html <http://jbrowse.org/blog/#bug-fixes>Bug fixes - Fix BioPerl setup after changes to the BioPerl distribution caused setup.sh to fail in all past JBrowse versions (issue #1310 <https://github.com/gmod/jbrowse/issues/1310>, @cmdcolin <https://github.com/cmdcolin>) - Fix issue with NeatCanvasFeatures not drawing gradients on some features. Thanks to @mara-sangiovanni <https://github.com/mara-sangiovanni> for reporting (issue #1311 <https://github.com/gmod/jbrowse/issues/1311>, @cmdcolin <https://github.com/cmdcolin>) - Fix issue for exporting GFF3 for some nested attributes by dumping JSON into the value field. Thanks to @dionnezaal <https://github.com/dionnezaal> for reporting (issue #1309 <https://github.com/gmod/jbrowse/issues/1309>, @cmdcolin <https://github.com/cmdcolin>) |