Menu
▾
▴
Re: [Gmod-tripal] Tripal & Python
|
From: Anthony B. <ant...@in...> - 2018-09-18 09:48:39
|
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
</head>
<body bgcolor="#FFFFFF" text="#000000">
<p>Hi,</p>
<p>I'm a little confused, from what I understand, it looks a lot
like what we (Helena Rasche, me and now Matéo Boudet) have been
working on during the last years:</p>
<ul>
<li>python-tripal (<a class="moz-txt-link-freetext"
href="https://github.com/galaxy-genome-annotation/python-tripal/"
moz-do-not-send="true">https://github.com/galaxy-genome-annotation/python-tripal/</a>)
to load/query data to/from a Tripal instance</li>
<li>python-chado (<a class="moz-txt-link-freetext"
href="https://github.com/galaxy-genome-annotation/python-chado/"
moz-do-not-send="true">https://github.com/galaxy-genome-annotation/python-chado/</a>)
to load/query data to/from a Chado database (Tripal or not).</li>
<li>chado-schema-builder (<a class="moz-txt-link-freetext"
href="https://github.com/erasche/chado-schema-builder/"
moz-do-not-send="true">https://github.com/erasche/chado-schema-builder/</a>)
to prepare pre-loaded, ready-to-use Chado SQL dumps.</li>
</ul>
<p>So I think building on these bases would be much easier than
starting something from scratch and reinventing the wheel...</p>
<p>Of course contributions and feature requests are warmly welcome
for all these projects.<br>
</p>
<p>I'd be happy to discuss it in a meeting if there's interest
(french timezone).<br>
</p>
<p>Cheers<br>
</p>
<p>Anthony Bretaudeau</p>
<p>BIPAA/GenOuest, Rennes, France<br>
</p>
<p><br>
</p>
<div class="moz-cite-prefix">Le 17/09/2018 à 18:00, Stephen Ficklin
a écrit :<br>
</div>
<blockquote type="cite"
cite="mid:b96...@gm...">Hi All,
<br>
<br>
In our recent Tripal User's meeting we spoke about several issues
related to longevity and flexibility of Tripal. One of the
decisions from this meeting was to work towards separation of
components of Tripal that are not specific to Drupal so that
others who would prefer to not use Drupal can take advantage of
the infrastructure that Tripal provides. These non-Drupal
components (such as Chado installers, data loaders, entities and
fields) will form a new Tripal library which can be used by the
Tripal Drupal module or by others who decide not to use Drupal. <br>
<br>
One suggestion that was put forth was to perform a feasibility
study to see if a Python implementation of this new Tripal library
could work. Python was selected because if of its broad use in
informatics and data analytics. To be clear, this does not mean
that Tripal will be abandoning Drupal or PHP. If the feasibility
study demonstrates difficulty integrating with Drupal or
not-enough interest from our community then we will explore a
PHP-based Tripal core library instead. <br>
<br>
We are reaching out to the community to solicit volunteers to help
with this initial feasibility project. We'd like to have a kick
off meeting for the Python implementation in the next few weeks.
If you are interested in participating can you please send me an
email as well as your time zone so we can coordinate a meeting
time. <br>
<br>
Thanks! <br>
Stephen <br>
<br>
<br>
<br>
<br>
_______________________________________________ <br>
Gmod-tripal mailing list <br>
<a class="moz-txt-link-abbreviated"
href="mailto:Gmo...@li..."
moz-do-not-send="true">Gmo...@li...</a> <br>
<a class="moz-txt-link-freetext"
href="https://lists.sourceforge.net/lists/listinfo/gmod-tripal"
moz-do-not-send="true">https://lists.sourceforge.net/lists/listinfo/gmod-tripal</a>
<br>
</blockquote>
</body>
</html>
|