Re: [Gmod-ajax] JBrowse 'Save track data' not working

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That's interesting, it looks like file saving might not be supported on
that browser and platform and JBrowse might not be detecting that fact?

What are the exact versions of JBrowse, the web browser, and the operating
system you are trying this with?

On Thu, Jul 19, 2018 at 1:04 PM Vaneet Lotay <van...@uc...>
wrote:

> Hey guys,
>
>
>
> I have checked the option in both Firefox and Chrome browsers for
> automatically saving downloads to a specific folder without prompting.  I
> tried the option enabled and disabled and in both cases it doesn’t work in
> that it isn’t being saved in the default download folder or it’s not
> prompting me to pick the location in where I save the file.  It appears
> there’s an error happening though if we look at the Java console, so I
> pasted it here below:
>
>
>
> GET https://www.google-analytics.com/analytics.js 0 ()
>
> instrumentation.js:23 TypeError: saveAs is not a function
>
>     at Object._fileDownload (_ExportMixin.js:252)
>
>     at Object.<anonymous> (_ExportMixin.js:178)
>
>     at lang.js:385
>
>     at Object.<anonymous> (FASTA.js:26)
>
>     at lang.js:385
>
>     at SeqFeature.js:182
>
>     at signalListener (Deferred.js:37)
>
>     at signalWaiting (Deferred.js:28)
>
>     at Deferred.resolve (Deferred.js:192)
>
>     at all.js:68 "TypeError: saveAs is not a function
>
>     at Object._fileDownload (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:15820:7)
>
>     at Object.<anonymous> (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:15737:20)
>
>     at http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:4772:55
>
>     at Object.<anonymous> (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:38890:9)
>
>     at http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:4772:55
>
>     at http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:12939:9
>
>     at signalListener (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45708:21)
>
>     at signalWaiting (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45699:4)
>
>     at Deferred.resolve (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45863:5)
>
>     at http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:49394:16
>
>     ----------------------------------------
>
>     rejected at signalDeferred (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45755:15)
>
>     at signalListener (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45726:5)
>
>     at signalWaiting (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45699:4)
>
>     at Deferred.resolve (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45863:5)
>
>     at http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:49394:16
>
>     at signalListener (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45708:21)
>
>     at signalWaiting (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45699:4)
>
>     at Deferred.resolve (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45863:5)
>
>     at signalListener (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45708:21)
>
>     at signalWaiting (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45699:4)
>
>     ----------------------------------------
>
> Error
>
>     at Promise.Deferred.then.promise.then (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:45923:24)
>
>     at Object.getFeatures (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:11005:20)
>
>     at Object.getReferenceSequence (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:12933:12)
>
>     at Object.exportRegion (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:38889:18)
>
>     at Object.<anonymous> (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:15849:12)
>
>     at http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:4772:55
>
>     at contextRequire (
> http://jbrowse-test.xenbase.org/JBrowse/dist/main.bundle.js:265:25)
>
>     at req (
> http://jbrowse-test.xenbase.org/JBrowse/dist/main.bundle.js:159:21)
>
>     at Object.exportRegion (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:15844:19)
>
>     at Object.<anonymous> (
> http://jbrowse-test.xenbase.org/JBrowse/dist/0.bundle.js:15734:18)"
>
>
>
> Thanks,
>
>
>
> Vaneet
>
>
>
>
>
>
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*Vaneet
> Lotay*
>
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>
>
>
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*Xenbase
> Bioinformatician*
>
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>
>
> *716 ICT Building - University of Calgary*
>
> *2500 University Drive NW
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*
>
> *Calgary AB T2N 1N4
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*
>
> *CANADA
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*
>
>
>
> *From:* Robert Buels [mailto:rb...@gm...]
> *Sent:* Wednesday, July 18, 2018 7:35 PM
> *To:* Scott Cain <sc...@sc...>
> *Cc:* Vaneet Lotay <van...@uc...>;
> gmo...@li...
> *Subject:* Re: [Gmod-ajax] JBrowse 'Save track data' not working
>
>
>
> It should look and work the same as any other file download in the
> browser. Which with most browsers is that it just downloads the file into
> your downloads folder. Is it not doing that?
>
> On Wed, Jul 18, 2018 at 8:32 AM Scott Cain <sc...@sc...> wrote:
>
> Hi Vaneet,
>
>
>
> Now that I've reread your email and also tried it myself to remind me how
> it works--it does not prompt you for a name or location.  It assigns a name
> based on the track and location and puts a file in your default download
> location.
>
>
>
> Scott
>
>
>
>
>
> On Wed, Jul 18, 2018 at 11:26 AM, Scott Cain <sc...@sc...> wrote:
>
> Hi Vaneet,
>
>
>
> Can you check the javascript console when you're doing that to see if it
> gives any useful feedback?
>
>
>
> Thanks,
>
> Scott
>
>
>
>
>
> On Tue, Jul 17, 2018 at 7:04 PM, Vaneet Lotay <van...@uc...>
> wrote:
>
> Hello,
>
>
>
> I’m having trouble saving track data to capture sequence data in FASTA
> format, model data in GFF3 or any other track and format.
>
>
>
> I click on the drop down arrow next to the track label and then ‘Save
> track data’.  Whether I click on the visible region or the whole reference
> sequence and no matter which output format I select it doesn’t work. When I
> click on ‘Save’ the dialog box always closes and nothing happens.
>
>
>
> I assume there should be another box popping up asking where to save the
> file and also how to name it?
>
>
>
> I’ve tested this on both Firefox and Chrome browsers, still the same
> problem.  I’ve also tested both browsers while disabling the pop-up
> blocker, in case that was interfering but still the same problem remained.
>
>
>
> Please let me know if anyone can resolve this issue.
>
>
>
> Thanks,
>
>
>
> Vaneet
>
>
>
>
>
>
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*Vaneet
> Lotay*
>
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>
>
>
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*Xenbase
> Bioinformatician*
>
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>
>
> *716 ICT Building - University of Calgary*
>
> *2500 University Drive NW
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*
>
> *Calgary AB T2N 1N4
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*
>
> *CANADA
> <https://maps.google.com/?q=2500+University+Drive+NW+%0D%0A+%0D%0A+Calgary+AB+T2N+1N4+%0D%0A+%0D%0A+CANADA&entry=gmail&source=g>*
>
>
>
>
>
>
> ------------------------------------------------------------------------------
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> _______________________________________________
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> Gmo...@li...
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>
>
>
>
> --
>
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain
> dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> <(216)%20392-3087>
> Ontario Institute for Cancer Research
>
>
>
>
> --
>
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain
> dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> <(216)%20392-3087>
> Ontario Institute for Cancer Research
>
>
> ------------------------------------------------------------------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> Gmod-ajax mailing list
> Gmo...@li...
> https://lists.sourceforge.net/lists/listinfo/gmod-ajax
>
>