From: Inderski, B. - A. <Blake.Inderski@ARS.USDA.GOV> - 2017-10-17 21:20:19
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Greetings! I’m new to Chado and uncertain on how to properly integrate data into the existing Chado schema. My target organism is Porcine Reproductive and Respiratory Syndrome Virus (PRRSV), a single stranded, positive sense RNA virus with a genome approximately 15kb in length. Below are the data fields I’m planning to include, as well as related examples: Metadata Unique ID (automatically generated, sequential identifier) – GB:0000000001 GenBank accession - U40784 Strain/isolate – PRRSv 92V058 Sample isolate source – serum, lymph node, etc. Genotype – Type 1 or Type 2 Author – Doe, J. Sample collection location (state/country) - North Carolina, USA Sample collection date – 30-Dec-2015 Sequencing data Raw DNA sequence – tttggtaatgtgtcaggcattgtggctgtgtgtgtta… Open reading frame (ORF) and non-structural protein (nsp) type – ORF1ab, ORF2, nsp1, nsp12 ORF/nsp location (relative to raw DNA sequence) – 3-501 ORF/nsp translation – MAAATLFLLAGAQHIMVSEAFACKPCFSTHLSD… Any help is much appreciated! Thanks, Blake This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately. |