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From: Monica Munoz-T. <mcm...@lb...> - 2016-12-09 18:39:54
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*We are pleased to announce the latest Apollo release* *Apollo 2.0.5 * *Some of the new features include:* - Numerous UI and performance improvements, including easier navigation between annotated elements via the Annotator Panel. - Better server and client-side reporting. - It is now possible to also include metadata on import. - Upgrade to Java 8 / GWT 2.8, and updated JBrowse. - Apollo 2.0.5 uses the latest JBrowse commit as of 2016-12-09 ( #9334e76fd <https://github.com/GMOD/jbrowse/commit/9334e76fd7530681fa2dcc71d4440141e1414cfd>). Use ./apollo clean-all or install from a formal release download for best performance. *Some important bug fixes:* - Import script were logging preferences unnecessarily. - Improved security for non-public genomes. - Fixed for going between logged-out mode and the Annotator Panel while retaining history. - Improved display of sequence over the annotation after moving the annotation to the opposite strand. - Users will see a warning message when it is not possible to create an intron with canonical splice sites in the selected region. * The *latest release* can be downloaded from GitHub at: https://github.com/GMOD/Apollo/releases/latest * *Detailed, searchable documentation* on pre-requisites, configuration, and installation guides found at: http://genomearchitect.readthedocs.io/ * A more *detailed account of all changes* is available in the Apollo ChangeLog: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md * *Quick-Start Guide for Apollo 2.0.x*: If you already have Apollo instances running, you can use your current JBrowse data directories. The quick-start guide is available at: http://genomearchitect.rea dthedocs.io/en/stable/Apollo2Build.html * *Migrating existing annotations:* Please find detailed information about migrating existing installations and their annotations at http://genomearchitect.readthedocs.io/en/latest/Migration.html ** Troubleshooting, GitHub tracker, Mailing List: * - Browse the Troubleshooting guide at http://genomearchitect.readthe docs.io/en/stable/Troubleshooting.html <http://genomearchitect.readthedocs.io/en/stable/Troubleshooting.html> - Open a GitHub issue at https://github.com/GMOD/Apollo/issues/ - Post your questions on our mailing list at ap...@li... * *The Apollo User Guide* is available at http://genomearchitect.org/use rs-guide/ ** Public Demo: If you are new to Apollo we encourage you to learn more about our software and its functionality by taking a tour of our Apollo Demo at http://genomearchitect.org/demo/ <http://genomearchitect.org/demo/>* * These and more details are available at the Apollo Website <http://genomearchitect.org/> and the Apollo repository <https://github.com/GMOD/Apollo/blob/master/README.md>. We look forward to your questions and suggestions. Sincerely, The Apollo Development Team <http://genomearchitect.org/about/> [image: Inline image 1] It is very likely you will receive this message more than once; we offer our sincere apologies for the redundancy. Bee photograph by www.AlexanderWild.com -- Mentorship Matters! -- Monica Munoz-Torres, PhD. Berkeley Bioinformatics Open-source Projects (BBOP) Environmental Genomics and Systems Biology Division Lawrence Berkeley National Laboratory Mailing Address: Lawrence Berkeley National Laboratory 1 Cyclotron Road Mailstop 977 Berkeley, CA 94720 |