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From: Monica Munoz-T. <mcm...@lb...> - 2016-08-10 02:16:35
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*We are pleased to announce the latest Apollo release* *Apollo 2.0.4* *Some of the new features include: * - Users may download genomic sequences from highlighted regions. - Information from parent features can be retained when loading transcripts onto the 'User-created Annotations' area using the command line. - REMOTE_USER authentication and user authentication modules are now available. - Ability to enter pre-specified (canned) values for *Attributes* in the 'Information Editor', similar to canned *Comments*. - Added documentation for using Apollo with Docker <https://github.com/GMOD/Apollo/blob/master/docs/Setup.md#configure-for-docker> . *Some important fixes include: * - Fixed multiple errors in add_transcript_from_gff3_to_annotations.pl script - Fixed service timeout / disconnection silent error - Fixed several deployment installation issues * The* latest release* can be downloaded from GitHub at: *https://github.com/GMOD/Apollo/releases/latest <https://github.com/GMOD/Apollo/releases/latest>* ** Detailed, searchable documentation* on pre-requisites, configuration, and installation guides found at: http://genomearchitect.readthedocs.io/ <http://genomearchitect.readthedocs.io/en/stable/> *** A more *detailed account of all changes* is available in the Apollo ChangeLog: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md ** Quick-Start Guide for Apollo 2.0.x:* If you already have Apollo instances running, you can use your current JBrowse data directories. The quick-start guide is available at: http://genomearchitect.readthedocs.io/en/stable/Apollo2Build.html ** Migrating existing annotations: *You will need to migrate existing annotations from Web Apollo 1.0.x. Please find detailed information about migrating annotations at http://genomearchitect.readthedocs.io/en/latest/ Migration.html ** Troubleshooting, GitHub tracker, Mailing List:* - Browse the Troubleshooting guide at http://genomearchitect.readthedocs.io/en/stable/Troubleshooting.html - Open a GitHub issue at https://github.com/GMOD/Apollo/issues/ - Post your questions on our mailing list at ap...@li... ** The Apollo User Guide* is available at http://genomearchitect.org/ users-guide/ ** Public Demo:* If you are new to Apollo we encourage you to learn more about our software and its functionality by taking a tour of our Apollo Demo at http://genomearchitect.org/demo/ * *These and more details* are available at the Apollo Website <http://genomearchitect.org/> and Apollo repository <https://github.com/GMOD/Apollo/blob/master/README.md>. We look forward to your questions and suggestions. Sincerely, The Apollo Development Team <http://genomearchitect.org/about/> [image: Inline image 1] It is very likely you will receive this message more than once. We offer our sincere apologies for the redundancy. Bee image CopyRight of www.AlexanderWild.com | DNA image from ShutterStock.com -- Mentorship Matters! -- Monica Munoz-Torres, PhD. Berkeley Bioinformatics Open-source Projects (BBOP) Environmental Genomics and Systems Biology Division Lawrence Berkeley National Laboratory Mailing Address: Lawrence Berkeley National Laboratory 1 Cyclotron Road Mailstop 977 Berkeley, CA 94720 |