Re: [Gmod-schema] GRIN into Chado

[Chris M. <cjm...@lb...>]

Hi Ethy,

I believe there are two parts here

  1. Extracting relevant info for GRIN, including mapping their 
descriptors onto TO terms
  2. Loading this into Chado

I believe the bulk of the work would be in 1. This is something we have 
been looking into in the Planteome project. Pankaj, is this something 
we're going to tackle soon? We don't want to duplicate effort here

Once 1 is done, it can pipe the results to 2 in a format like GAF or 
Phenopackets (phenopackets.org). There is a GAF loader for Chado, but no 
phenopackets one yet. Either way part 2 should be turning the handle.

On 2 Jun 2016, at 11:48, Cannon, Ethalinda K [COM S] wrote:

> Has anyone tried loading GRIN data into Chado? I seem to recall 
> mention of this having been done or planned to be done, but don't 
> remember by whom.
>
>
> Ethy
>
> ------------------------------------------------------------------------------
> What NetFlow Analyzer can do for you? Monitors network bandwidth and 
> traffic
> patterns at an interface-level. Reveals which users, apps, and 
> protocols are
> consuming the most bandwidth. Provides multi-vendor support for 
> NetFlow,
> J-Flow, sFlow and other flows. Make informed decisions using capacity
> planning reports. 
> https://ad.doubleclick.net/ddm/clk/305295220;132659582;e_______________________________________________
> Gmod-schema mailing list
> Gmo...@li...
> https://lists.sourceforge.net/lists/listinfo/gmod-schema