From: David E. <em...@mo...> - 2016-04-15 19:45:16
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Hi All, FlyBase has implemented the Group Module in our chado instance and we're quite happy with it. (And in case we didn't say it before: complements and many thanks, Mara!) Here's some details on what we're using it for: http://flybase.org/static_pages/feature/previous/articles/2015_05/gene_groups.html And anyone who wants to have a look under the hood can grab the pg dump of the current FlyBase release here: ftp://ftp.flybase.net/releases/current/psql/ Best, -Dave On Fri, Apr 15, 2016 at 2:27 PM, Joe Carlson <jwc...@lb...> wrote: > Hi, > > There is a need for a module like this. The existing solutions and work > around are a bit messy. I’ve been trying out this module for representing > our protein families. And trading some email with Mara Kim, the author. > > I had a couple of suggestions about nomenclature and syntax (for example, > in feature_grpmember, the column grpmember_id references grp and not > grpmember.) > > I also think that a couple more fields in grp are needed: dbxref_id to > reference the primary dbxref and an is_obsolete boolean. > > This also seems to me to be a case where table inheritance may be useful. > I know there can be some performance problems with table inheritance but it > might be useful if there are many different types of ‘things’ that people > want to put into groups. > > Joe > > On Apr 15, 2016, at 9:50 AM, Stephen Ficklin <spf...@gm...> wrote: > > Hi Sofia, > > The Group Module is a candidate module for inclusion in a future release > of Chado. I'm CC'ing my response to the Chado schema mailing list for input > from others who have implemented it. Currently, there is not Tripal > module to support it. Although I believe there are some Tripal sites that > may be using it and have some support. If they read this and respond they > may be able to share some insights. > Stephen > > On 4/8/2016 8:57 AM, Sofia Robb wrote: > > Hello All, > > I am still working on adding gene groups to one of my tripal installs. I > found this chado module: > > http://gmod.org/wiki/Chado_Group_Module > > Is there a recommended way to add these modules to the chado in tripal? > > > Thanks, > Sofia > > > > > ------------------------------------------------------------------------------ > > > > _______________________________________________ > Gmod-tripal mailing lis...@li...https://lists.sourceforge.net/lists/listinfo/gmod-tripal > > > > ------------------------------------------------------------------------------ > Find and fix application performance issues faster with Applications > Manager > Applications Manager provides deep performance insights into multiple > tiers of > your business applications. It resolves application problems quickly and > reduces your MTTR. Get your free trial! > > https://ad.doubleclick.net/ddm/clk/302982198;130105516;z_______________________________________________ > Gmod-schema mailing list > Gmo...@li... > https://lists.sourceforge.net/lists/listinfo/gmod-schema > > > > > ------------------------------------------------------------------------------ > Find and fix application performance issues faster with Applications > Manager > Applications Manager provides deep performance insights into multiple > tiers of > your business applications. It resolves application problems quickly and > reduces your MTTR. Get your free trial! > https://ad.doubleclick.net/ddm/clk/302982198;130105516;z > _______________________________________________ > Gmod-schema mailing list > Gmo...@li... > https://lists.sourceforge.net/lists/listinfo/gmod-schema > > |