[Gmod-apollo-cmts] SF.net SVN: gmod:[25282] apollo/trunk/src/java/apollo/analysis/ RemoteBlastNCBI.java

[<gk...@us...>]

Revision: 25282
          http://gmod.svn.sourceforge.net/gmod/?rev=25282&view=rev
Author:   gk_fan
Date:     2013-02-08 21:25:30 +0000 (Fri, 08 Feb 2013)
Log Message:
-----------
Relaxed URL encoding since current qBlast service doesn't handle certain escape codes.

Modified Paths:
--------------
    apollo/trunk/src/java/apollo/analysis/RemoteBlastNCBI.java

Modified: apollo/trunk/src/java/apollo/analysis/RemoteBlastNCBI.java
===================================================================
--- apollo/trunk/src/java/apollo/analysis/RemoteBlastNCBI.java	2013-02-01 21:04:39 UTC (rev 25281)
+++ apollo/trunk/src/java/apollo/analysis/RemoteBlastNCBI.java	2013-02-08 21:25:30 UTC (rev 25282)
@@ -361,7 +361,7 @@
     if (opts.isSetFilterMaskLookup()) {
       buf.append("FILTER=m&");
     }
-    buf.append(URLEncoder.encode("GAPCOSTS=" + opts.getGapOpenCost() + " " + opts.getGapExtendCost() + "&", ENCODING));
+    buf.append("GAPCOSTS=" + URLEncoder.encode(opts.getGapOpenCost() + " " + opts.getGapExtendCost(), ENCODING) + "&");
     buf.append("GENETIC_CODE=" + opts.getGeneticCode() + "&");
     buf.append("HITLIST_SIZE=" + opts.getNumberOfHits() + "&");
   }

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