[Gmod-schema-cmts] SF.net SVN: gmod:[25267] schema/trunk/chado/bin/gmod_load_cvterms.pl

[<nm...@us...>]

Revision: 25267
          http://gmod.svn.sourceforge.net/gmod/?rev=25267&view=rev
Author:   nm249
Date:     2012-07-24 19:07:50 +0000 (Tue, 24 Jul 2012)
Log Message:
-----------
messed up secondary dbxrefs are causing loading failure

Modified Paths:
--------------
    schema/trunk/chado/bin/gmod_load_cvterms.pl

Modified: schema/trunk/chado/bin/gmod_load_cvterms.pl
===================================================================
--- schema/trunk/chado/bin/gmod_load_cvterms.pl	2012-06-12 11:36:58 UTC (rev 25266)
+++ schema/trunk/chado/bin/gmod_load_cvterms.pl	2012-07-24 19:07:50 UTC (rev 25267)
@@ -572,6 +572,7 @@
 		    $new_term->add_secondary_dbxref($i);
 		}
 		foreach my $r ($novel_terms{$k}->get_dbxrefs() ) { #store definition's dbxrefs in cvterm_dbxref
+		    if (!$r->database || !$r->primary_id) { next; } # skip def. dbxrefs without both db_name and accession
 		    my $def_dbxref= $r->database() . ':' . $r->primary_id();
 		    message("adding definition dbxref $def_dbxref to cvterm_dbxref\n");
 		    $new_term->add_secondary_dbxref($def_dbxref, 1);

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