[Gmod-apollo-cmts] Apollo Chado-Adapter Error

[vishwas v. <vis...@gm...>]

 Hi,

I am working at the K-State Bioinformatics Center. Here we have set up a
webstart version of Apollo for our website http://agripestbase.org. It is
connected to a chado-postgresql database through a chado-adaptor.

Whenever we annotate any gene and save it in Apollo, it shows up in GBrowse
too
as GBrowse is also connected to the same database. But when we delete the
same
annotated gene from Apollo by right clicking on it. It is deleted from the
annotation (blue) track but it is still there in the annotation tab in the
menu
of Apollo. Also when we see in Gbrowse it is there. From which we concluded
that even after deleting the gene from Apollo it is not removed completely
from
all the tables in the database, hence it shows up again in GBrowse and
Apollo
annotation tab (in menu) too.

We are using ubuntu 10.04, Apollo 1.11.6, Chado 0.30, PostgreSql 8.4,
GBrowse
2.23 versions.

Please it will be great if any one could let us know if it is a bug in
apollo
or we have done something wrong.

Regards,
Vishwas Vaswani
Kansas State University