Re: [Gmod-ajax] using JBrowse

[Ian H. <ih...@be...>]

Hi Andrea, yes there is nothing in principle stopping you from 
converting your data into these formats. It should be pretty easy to get 
at least a coarse representation of most annotation data in these 
formats. There are a lot of conversion scripts e.g. in BioPerl if you're 
using another standard format. Ian

On 4/6/11 10:59 AM, Andrea Edwards wrote:
> Hello
>
> I am considering using JBrowse but it seems from the pre requisites page
> that the underlying data should be in  GFF/Bed files or a genomic
> annotation database such as chado, Bio::DB::SeqFeature::Store, or
> Bio::DB::GFF.
>
> Could you still use JBrowse if your data was not in this format? I
> presume there is nothing stopping you from generating BED files of your
> annotations from your custom database and then generating the JSON
> tracks from these files?
>
> Thanks a lot
>
>
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