[Gmod-ajax] jbrowse/flatfile-to-json.pl not adding all tracks

[Dana P. <dan...@gm...>]

I've got a gff generated via MAKER of a contig.  It's got 9 features of type
"gene", but when I run flatfile-to-json.pl to create a track out of these,
it only adds 5 of them.  I'm using the command:
/var/www/jbrowse/bin/flatfile-to-json.pl --tracklabel "Genes" --key "Genes"
--getType --getLabel --autocomplete label --cssclass feature5 --type gene
--gff ./ConsensusfromContig25517.gff


Is there any particular reason it wouldn't add all features present?

Thanks!


-- 
Dana Price
Laboratory Researcher in Bioinformatics
Rutgers, The State University
Bhattacharya Lab
http://dblab.rutgers.edu
d....@ru...