Re: [Gmod-schema] sequence quality values

[Lukas M. <la...@co...>]

Standard phred quality look like this:

45 65 67 56 67 78 ...

(if you are lucky! - the higher the better). These are scores for each nucleotide, in order, separated by a space, of course they can also be single digit values in there.

cheers
Lukas

On Oct 28, 2010, at 10:25 AM, David Emmert wrote:

> Hi Lukas,
> 
> I'm curious.  What does the quality values data look like?  
> Is it continuous data, or ???
> 
> -Dave
> 
> From gmo...@li...  Thu Oct 28 10:16:43 2010
>>> To: Lukas Mueller <la...@co...>
>>> Cc: gmod schema <gmo...@li...>
>>> Subject: Re: [Gmod-schema] sequence quality values
>>> 
>>> Hi Lukas,
>>> 
>>> Given that there's currently no place for them, I'd say it's a featureprop :-)
>>> 
>>> Scott
>>> 
>>> 
>>> On Thu, Oct 28, 2010 at 9:49 AM, Lukas Mueller <la...@co...> wrote:
>>>> Hi,
>>>> 
>>>> how do you store quality values for sequences in the feature table? (Don''t tell me it's a feature prop  :-)
>>>> 
>>>> cheers
>>>> Lukas
>>>> 
>>>> 
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>>> 
>>> 
>>> -- 
>>> ------------------------------------------------------------------------
>>> Scott Cain, Ph. D.                                   scott at scottcain dot net
>>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>>> Ontario Institute for Cancer Research
>>> 
>>> ------------------------------------------------------------------------------
>>> Nokia and AT&T present the 2010 Calling All Innovators-North America contest
>>> Create new apps & games for the Nokia N8 for consumers in  U.S. and Canada
>>> $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing
>>> Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store 
>>> http://p.sf.net/sfu/nokia-dev2dev
>>> _______________________________________________
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