[Gmod-ajax] Colour reads from a BAM file

[James M. <jm...@sa...>]

Hello,

I am using Jbrowse to view some RNAseq data just on my local machine.

Is it possible to colour the reads in a single track differently based on information I have in the id. 

I have 256 different classes (based on a 4bp sequence) so simply creating separate tracks for each class would not work as there would be too many tracks to view at once.

If I could colour the reads I think it will be easy to visualise the distribution of the different classes at points where the reads pileup.

Any help on this would be great.

Thanks,

James

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