From: Mitch S. <mit...@be...> - 2010-10-06 01:31:41
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Okay, one of the GFF files that you sent earlier had strand information for the motifs. I didn't notice that your later GFF files listed the motifs as being unstranded. That's why, in the CSS example I sent earlier, the CSS classes were all listed with separate "plus-" and "minus-" versions. If the motifs don't have strand information, then the CSS file should have CSS class names without those "plus-" and "minus-" prefixes. For example, in the earlier example CSS file I sent, I had this: ===== .plus-small_red, .plus-small_blue, .plus-small_purple, .plus-tall_blue, .plus-tall_purple, .minus-small_red, .minus-small_blue, .minus-small_purple, .minus-tall_blue, .minus-tall_purple { position: absolute; cursor: pointer; z-index: 10; min-width: 1px; } .plus-small_red, .minus-small_red { background-color: #EB2A2A; height: 6px; margin-top: -1px; } .plus-small_blue, .minus-small_blue { background-color: #46A1E0; height: 6px; margin-top: -1px; } .plus-small_purple, .minus-small_purple { background-color: #7322BF; height: 6px; margin-top: -1px; } .plus-tall_blue, .minus-tall_blue { background-color: #46A1E0; height: 10px; margin-top: -3px; } .plus-tall_purple, .minus-tall_purple { background-color: #7322BF; height: 10px; margin-top: -3px; } ===== but if your motifs are unstranded, you could have this instead: ===== .small_red, .small_blue, .small_purple, .tall_blue, .tall_purple { position: absolute; cursor: pointer; z-index: 10; min-width: 1px; } .small_red { background-color: #EB2A2A; height: 6px; margin-top: -1px; } .small_blue { background-color: #46A1E0; height: 6px; margin-top: -1px; } .small_purple { background-color: #7322BF; height: 6px; margin-top: -1px; } .tall_blue { background-color: #46A1E0; height: 10px; margin-top: -3px; } .tall_purple { background-color: #7322BF; height: 10px; margin-top: -3px; } ===== Or, if your data has both stranded and unstranded features, you could include both stranded and unstranded versions of your CSS classes. Mitch On 10/05/2010 03:39 PM, Anja Friedrich wrote: > done > > > Date: Tue, 5 Oct 2010 15:37:01 -0700 > > From: mit...@be... > > To: gmo...@li...; fri...@ho... > > Subject: Re: [Gmod-ajax] data are not displayed even though they > were loaded (JBrowse) > > > > Can you do this: > > > > cd /var/www > > tar czf taro-tracks.tar.gz data/tracks > > > > That will create a file named taro-tracks.tar.gz, with your generated > > data. Then can you email the file to me? That should help me figure > > out what's going on. > > > > Mitch > > |