Re: [Gmod-ajax] 0 features found/no display of data

[anja <fri...@ho...>]

Hi Scott,

I attached it

Anja

Date: Fri, 1 Oct 2010 06:01:51 -0700
From: ml-...@n3...
To: fri...@ho...
Subject: Re: 0 features found/no display of data



Hi Anja,


It is probably a problem with your GFF.  Since there have been so many

revisions to it, can you remind us what it looks like?


Scott



On Fri, Oct 1, 2010 at 5:10 AM, Anja Friedrich

<[hidden email]> wrote:

> Hi all,

>

> I finally managed to load the data and to run bin/prepare-refseqs.pl

>

> anou@anou-laptop:/var/www$ bp_seqfeature_load.pl --d "dbi:Pg:dbname=test"

> --a DBI::Pg --c taro.gff

> loading taro.gff...

> 98 features loaded in

> 0.20s                                                    Building object

> tree... 0.02s

> load time:  0.23s

> anou@anou-laptop:/var/www$ bin/prepare-refseqs.pl --conf taro.json --refs

> NC_010109.1

> anou@anou-laptop:/var/www$ bin/biodb-to-json.pl --conf taro.json

>

> working on refseq NC_010109.1

> working on track nested_tandem_repeat

> got 0 features for nested_tandem_repeat

>

> But why 0 features? And when I try to see it in the browser I can only see

> the old data I was loading before- like there is no entry of taro...

>

> Anja

>

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-- 

------------------------------------------------------------------------

Scott Cain, Ph. D.                                   scott at scottcain dot net

GMOD Coordinator (http://gmod.org/)                     216-392-3087

Ontario Institute for Cancer Research


------------------------------------------------------------------------------

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