Re: [Gmod-ajax] auto-complete problem

[Mitch S. <mit...@be...>]

  Since some data sources (chado, SeqFeature::Store) have IDs which 
aren't meaningful to users, JBrowse currently doesn't do searches on the 
ID field.  In the future, we probably should, but for right now you can 
add an Alias tag to your GFF3, something like:

NC_007488       GenBank gene    109368  110333  .       -       1       
ID=RSP_3942;Dbxref=GeneID:3712061;Name=yurN;locus_tag=RSP_3942;Alias=RSP_3942

And if you have more than one, you can make Alias be a comma-separated list:

NC_007488       GenBank gene    109368  110333  .       -       1       
ID=RSP_3942;Dbxref=GeneID:3712061;Name=yurN;locus_tag=RSP_3942;Alias=RSP_3942,foo,bar

Regards,
Mitch


On 09/26/2010 01:53 AM, David Breimann wrote:
> Hello,
>
> I have a GFF3 file with lines like:
> NC_007488       GenBank gene    109368  110333  .       -       
> 1       ID=RSP_3942;Dbxref=GeneID:3712061;Name=yurN;locus_tag=RSP_3942
> NC_007488       GenBank gene    108526  109371  .       -       
> 1       ID=RSP_3943;Dbxref=GeneID:3712060;Name=yurM;locus_tag=RSP_3943
>
> I added it using --type=gene --autocomplete=all, then generated names.
> However, I can only look for genes using their names (e.g. yurN) and 
> not their IDs or locus_tags.
>
>
> ------------------------------------------------------------------------------
> Start uncovering the many advantages of virtual appliances
> and start using them to simplify application deployment and
> accelerate your shift to cloud computing.
> http://p.sf.net/sfu/novell-sfdev2dev
>
>
> _______________________________________________
> Gmod-ajax mailing list
> Gmo...@li...
> https://lists.sourceforge.net/lists/listinfo/gmod-ajax