Re: [Gmod-ajax] Ensembl data

[Suzanna L. <se...@lb...>]

Gregg Helt has done most of the work needed to obtain UCSC data (we decided to do UCSC first and then Ensembl followed by Chado as third). He would have to  say where things stand at the moment, but I think it would be easier than starting from scratch.

-S
 
On Aug 4, 2010, at 3:39 AM, James Morris wrote:

> Hello,
> 
> I am developing a web application for GWAS results in specific  
> phenotypes.
> 
> I would like to use JBrowse to allow users to explore the genomic  
> region surrounding associations.
> 
> I plan to use the Ensembl database as the main source of data for the  
> application.
> 
> I would therefore like to display the Ensembl human reference and some  
> additional tracks like SNPs and genes in JBrowse.
> 
> Has somebody already done this and are files available? If this is not  
> the case would it be difficult to do so or is there an easier solution  
> such as using data from UCSC?
> 
> Many thanks,
> 
> James
> 
> 
> -- 
> The Wellcome Trust Sanger Institute is operated by Genome Research 
> Limited, a charity registered in England with number 1021457 and a 
> company registered in England with number 2742969, whose registered 
> office is 215 Euston Road, London, NW1 2BE. 
> 
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