Re: [Gmod-ajax] Trouble behind cherrypy

[Mariette <jma...@to...>]

Thanks Mitch for your reply,

it's working the probleme was coming from the path of the 'seqDir'
and the path of the  'url' fields which were not absolute from the
calling page.

Thanks again,
Jerome






Mitch Skinner a écrit :
> JBrowse doesn't use the directory listings; when JBrowse gets a file 
> from the server it's through a direct link (or a URL template, in some 
> places).
>
> It's harder to debug if I can't see the app, but my first guess would be 
> that it has something to do with relative URLs.  refSeq.js and 
> trackInfo.js both contain URLs relative to the directory containing the 
> jbrowse index.html file.
>
> That's assuming that you're using the default index.html file.  Are you 
> doing that, or are you doing something else?
>
> There's a setting (the "dataRoot" parameter to the Browser javascript 
> object constructor) that makes the root of those relative URLs 
> configurable, but because of a recent exchange on the gmod-ajax list I'm 
> looking at changing how that works.  If you've got a non-default 
> directory setup I'd be interested to know how you have things laid out, 
> so that we can make sure that setting works correctly for everyone.
>
> Regards,
> Mitch
>
> On 06/30/2010 06:06 AM, Mariette wrote:
>   
>> Hi,
>>
>> I'm trying to get jbrowse runing into our website. However it's not working,
>> I have the jbrowse environement displayed but not annotations and the
>> seqRef.
>> Jbrowse can read the refSeq.js and the trackinfo.js but doesn't read the
>> 'seqDir' and
>> the 'url' fields of these files.
>> We figured out that the jbrowse sample web site allows to list files
>> into directories.
>> Is it required to make jbrowse working ??
>> The problem is we're using the cherrypy web server which doesn't seems
>> to allow
>> files listing, and we're guessing this is the problem ? would that make
>> sens ??
>>
>> thanks for your reply,
>> Jerome
>>
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