[Gmod-ajax] Error converting BAM to JSON for browsing in Jbrowse

[sanjay s. <bea...@gm...>]

Hi,

I have a BAM file   and when i execute the following command  to
convert the BAM to Json :

$$ bin/flatfile-to-json.pl  --bam
/var/www/jbrowse/docs/tutorial/data_files/20100311.bam --cssclass exon
--tracklabel BAM_data --key "BAM Data"

I get the following error;

No index file for
/var/www/jbrowse/docs/tutorial/data_files/20100311.bam; try opening
file with -autoindex at /usr/local/lib/perl/5.10.0/Bio/DB/Sam.pm line
1940

I have installed the  prerequisite installed for browsing BAM files in
Jbrowse .I also have  the corresponding reference file in Json  and am
able to browse in Jbrowse.


Do we have to create any index for browsing BAM files in Jbrowse
before we convert it to Json .Please help  me in resolving the
following error.



Thanks,
Sanjay

-- 
Success is how many times u smile each day every day.