From: CHAN, K. 1 [AG/7721] <ken...@mo...> - 2010-03-18 09:36:35
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Hi guys, I encountered a strange result when using wig-to-json.pl. The quantitative track I got has a very low resolution and the values doesn't seem like corresponding to the wiggle file. I attached the wiggle file and the resulted picture after applied the following command: ./bin/wig-to-json.pl --wig /bifx/apache/htdocs/gbrowse2/databases/te_viewer/testing/TS_76715_CG_R_C overage.wig --out "event_data/TS_76715/" --key "Reads Coverage" --tile "event_data/TS_76715/" --tracklabel Coverage I noticed that the above command didn't generate the 'tiles' directory in the "event_data/TS_76715" as I specified. If I took out the tile bit (--tile "even_data/TS_76715"). The tile directory appears in the data dir. I tried to copy the tile dir to the "event_data/TS_76715" manually but the resolution didn't change. May I ask what the generated "tiles" directory is for? And do you have any idea how I can fix this problem of low resolution. Thanks. Regards, Kenneth --------------------------------------------------------------------------------------------------------- This e-mail message may contain privileged and/or confidential information, and is intended to be received only by persons entitled to receive such information. If you have received this e-mail in error, please notify the sender immediately. Please delete it and all attachments from any servers, hard drives or any other media. Other use of this e-mail by you is strictly prohibited. All e-mails and attachments sent and received are subject to monitoring, reading and archival by Monsanto, including its subsidiaries. The recipient of this e-mail is solely responsible for checking for the presence of "Viruses" or other "Malware". Monsanto, along with its subsidiaries, accepts no liability for any damage caused by any such code transmitted by or accompanying this e-mail or any attachment. --------------------------------------------------------------------------------------------------------- |