From: CHAN, K. 1 [AG/7721] <ken...@mo...> - 2010-03-17 16:26:28
|
Hello all, I downloaded the VMware ('Ending Image' in http://gmod.org/wiki/JBrowse_Tutorial) and tried to convert the configuration file (volvox_conf.json) to json. However no track was outputted by the following steps: - go to '/var/www/jbrowse/docs/tutorial/conf_files' - change the db_args attribute to point to the correct data directory: "-dir": "/var/www/jbrowse/docs/tutorial/data_files" }, - in the same conf_files directory and type: ../../../bin/biodb-to-json.pl --conf volvox.json - it created directories 'data/tracks', but somehow nothing is in both dir or sub-dir. Did I do anything wrong or missed out any crucial steps? (I was expecting the biodb-to-json.pl will generate all tracks in the config file directly.) Thanks. Regards, Kenneth --------------------------------------------------------------------------------------------------------- This e-mail message may contain privileged and/or confidential information, and is intended to be received only by persons entitled to receive such information. If you have received this e-mail in error, please notify the sender immediately. Please delete it and all attachments from any servers, hard drives or any other media. Other use of this e-mail by you is strictly prohibited. All e-mails and attachments sent and received are subject to monitoring, reading and archival by Monsanto, including its subsidiaries. The recipient of this e-mail is solely responsible for checking for the presence of "Viruses" or other "Malware". Monsanto, along with its subsidiaries, accepts no liability for any damage caused by any such code transmitted by or accompanying this e-mail or any attachment. --------------------------------------------------------------------------------------------------------- |