[Gmod-ajax] Tutorial out of date?

[Martin A. H. <ma...@ma...>]

I grabbed a fresh copy of Jbrowse and set about to install the test data
following the tutorial:

http://jbrowse.org/code/jbrowse-master/docs/tutorial/

However, at step one:

bin/prepare-refseqs.pl --fasta docs/tutorial/data_files/volvox.fa


Unknown option: fasta
USAGE:
       bin/prepare-refseqs.pl [--out <output directory>] --gff <gff file
describing refseqs>
   OR:
       bin/prepare-refseqs.pl [--out <output directory>] [--noseq] [--seqdir
<sequence data directory>] --conf <JBrowse config file> --refs <list of
refseq names> --refids <list of refseq IDs>
    <output directory>: defaults to "data"
    <sequence data directory>: chunks of sequence go here; defaults to
"<output directory>/seq"

    --noseq: do not prepare sequence data for the client.

    You can use a GFF file to describe the reference sequences, or
    you can use a JBrowse config file and a list of refseq names
    or a list of refseq IDs.  If you use a GFF file, it should
    contain ##sequence-region lines as described in the GFF specs.
    If you use a JBrowse config file, you can either provide a
    (comma-separated) list of refseq names, or (if the names
    aren't globally unique) a list of refseq IDs.


What is going on?



Martin