From: Martin A. H. <ma...@ma...> - 2009-10-17 17:23:47
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Hello Jbrowsers, I am working on getting Jbrowse to work on my system. One annoying thing I notice is the Perl scripts in the bin/ dir: generate-json.pl generate-names.pl gff-to-json.pl prepare-refseqs.pl all have a hardcoded path to #!/usr/bin/perl which means that the scripts will run on the system's perl and not on my locally installed perl - which has the required Bioperl installed. Please consider changing the shebang to #!/usr/bin/env perl Also, I believe that 'use warnings;' in all scripts and modules to invoke warnings locally allowing more fine grained control are better than calling perl with -w invoking warnings globally. Best regards, Martin |