Re: [Gmod-schema] defining organism groups

[naama.menda <naa...@gm...>]

The issue we have is not only how to distinguish different organisms by
taxonomy, but rather how to link to these groups.
If you have a unigene build of 10 drosophilids, where would you make the
link between the unigene build and the member organisms?


-Naama




On Thu, Sep 24, 2009 at 11:46 AM, kathleen.flybase <
kat...@gm...> wrote:

> Hi,
> Just a quick note. Very timely discussion.
>  Flybase is considering adding to the organism module, organism_cvterm as
> well as an organism_cvtermprop. We've ruffed out some use cases but I'm out
> of the office until next week so they are not readily available.  Basically
> the organism_cvterm table would hold more detailed info on how to build the
> taxonomic name. We are considering using organismprop to distinguish
> drosophilids vs non-drosophilids.
>
> Cheers,
> Kathleen Falls
>
>
> On Wed, Sep 23, 2009 at 7:14 PM, Chris Mungall <cj...@be...>wrote:
>
>>
>> I agree the cv module makes most sense here.
>>
>> I think ideally a new organism_cvterm relationship would be preferable
>> to organismprop.
>>
>> On Sep 23, 2009, at 7:27 PM, Don Gilbert wrote:
>>
>> > What about using the organismprop table, and creating a CV term to
>> > handle this? Much of chado's biological logic has been pushed into
>> > CV terms for various reasons. It seems to me that adding organism
>> > grouping
>> > CV terms would let you classify and group the species you want, much
>> > like having CV terms for the other bits (feature types, etc.) do.
>> > - Don
>> >
>> >
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>
>
> --
> Kathleen Falls
> FlyBase
> Department of Molecular and Cellular Biology
> Harvard University
> BL 4053
> 16 Divinity Ave
> Cambridge, MA 02138
>
> http://www.flybase.org/
>
>
>
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