Re: [Gmod-schema] defining organism groups

[kathleen.flybase <kat...@gm...>]

Hi,
Just a quick note. Very timely discussion.
 Flybase is considering adding to the organism module, organism_cvterm as
well as an organism_cvtermprop. We've ruffed out some use cases but I'm out
of the office until next week so they are not readily available.  Basically
the organism_cvterm table would hold more detailed info on how to build the
taxonomic name. We are considering using organismprop to distinguish
drosophilids vs non-drosophilids.

Cheers,
Kathleen Falls

On Wed, Sep 23, 2009 at 7:14 PM, Chris Mungall <cj...@be...> wrote:

>
> I agree the cv module makes most sense here.
>
> I think ideally a new organism_cvterm relationship would be preferable
> to organismprop.
>
> On Sep 23, 2009, at 7:27 PM, Don Gilbert wrote:
>
> > What about using the organismprop table, and creating a CV term to
> > handle this? Much of chado's biological logic has been pushed into
> > CV terms for various reasons. It seems to me that adding organism
> > grouping
> > CV terms would let you classify and group the species you want, much
> > like having CV terms for the other bits (feature types, etc.) do.
> > - Don
> >
> >
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-- 
Kathleen Falls
FlyBase
Department of Molecular and Cellular Biology
Harvard University
BL 4053
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Cambridge, MA 02138

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