Re: [Gmod-schema] defining organism groups

[Naama M. <naa...@gm...>]

Good point. A group can include accessions stored in the stock table.
If I have a library constructed from several strains, where would this
grouping info go?

-Naama



On Wed, Sep 23, 2009 at 8:36 PM, Isabelle Phan <isa...@sb...>wrote:

> Agreed. I think the correct module would be 'taxonomy', but organism is
> fine.
> Note that the current table structure (genus, species, strain) breaks down
> for some bacteria (and also viruses, though I guess these are not included
> in Model Organisms).
>
> Isabelle
>
> --
> Isabelle Phan, DPhil
> Seattle Biomedical Research Institute
> +1(206)256 7113
>
>
>
> > -----Original Message-----
> > From: Hilmar Lapp [mailto:hl...@du...]
> > Sent: Wednesday, September 23, 2009 2:07 PM
> > To: Robert Buels
> > Cc: sc...@sc...; gmod schema
> > Subject: Re: [Gmod-schema] defining organism groups
> >
> >
> > On Sep 23, 2009, at 2:12 PM, Robert Buels wrote:
> >
> > > Question is, should they go into
> > >
> > > A.) the organism module
> > > B.) the phylogeny module
> >
> >
> > As stated so far the rationale behind it doesn't strike me as
> > having much or anything to do with phylogeny, so I vote for A.
> >
> > Organismprop could be used too. If you wanted to attach
> > semantics to the grouping, it'd probably be the better way of
> > doing this. Or the group table should have a link to cvterm.
> >
> >         -hilmar
> > --
> > ===========================================================
> > : Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
> > ===========================================================
> >
> >
> >
> >
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