[Gmod-ajax] Using multiple glyphs per track

[David R. <ros...@uc...>]

 From what I can see, there is no 'easy' way to use multiple glyphs  
per track in the current implementation (something I am interested in  
doing).  Is this something you plan to implement?

I have come up with a short-term solution (hack) to this problem  
through modifying the FeatureTrack.js file.

	here's a diff of my addition:


--- FeatureTrack.js	2009-09-23 21:04:08.000000000 -0500
+++ FeatureTrack.old.js	2009-09-23 15:42:15.000000000 -0500
@@ -363,32 +363,6 @@
              featDiv.className = "minus-" + className; break;
          }

-
-        var cnvReTester = /^CNV-.*$/;
-        if (feature[name].search(cnvReTester) == 0) {
-            var fSlots = feature[name].split(/-/);
-            if (fSlots[1].charAt(0) == '1') { // i.e. is CNV
-                if ((fSlots[1].charAt(1) * 1) < 2) { // i.e. is  
deletion
-                    featDiv.className = 'deletion' +  
fSlots[1].charAt(1);
-                } else {
-                    featDiv.className = 'duplication' +  
fSlots[1].charAt(1);
-                }
-            } else if (fSlots[1].charAt(0) == '2') { // i.e. is probe
-                switch (fSlots[1].charAt(1)) {
-                case '1':
-                    featDiv.className = 'snpprobe'; break;
-                case '2':
-                    featDiv.className = 'exonprobe'; break;
-                case '3':
-                    featDiv.className = 'gapprobe'; break;
-                }
-            }
-        };
-
-
-
-
-
      if ((phase !== undefined) && (feature[phase] !== null))
          featDiv.className = featDiv.className + feature[phase];



As you can see, I wrote it specifically to address my particular  
needs, although it could easily be 'generalized' to allow for any  
javascript callback using the 5 features stored in the json data.




David M. Rosenberg
University of Chicago
Committee on Neurobiology
947 E 58th St. MC 0928
Chicago, IL 60637

(773) 299-8740

ros...@uc...
http://www.palmerlab.org/Members/rosenbergdm