[Gmod-gene-page] gene page

[Bromberg, S. <SBr...@ma...>]

Here' a list from RGD.  It includes a lot of what we use now (plus some we
are planning) but I think it wouold be appropriate for most organisms.  (I'm
also attaching the file.)

DATABASE ID
SYMBOL & NAME
ALIAS_SYMBOL & NAME
DESCRIPTION - brief (~250 char) text; basic info, including function,
process, disease, etc.; why someone would be interested in the gene 
SEQUENCE ACC IDs with links
	GenBank/EMBL/DDBJ
		mRNA
		protein
		genomic
		contig
		unigene
	Refseq (mRNA and protein)
	Primers
REFERENCES
	Curated - database ID and other IDs, e.g., PubMed 
	Others  
EXTERNA.L DATABASE IDs and LINKS
	Uniprot
	Ensembl
	Entrez gene
	OMIM
	Kegg
	Reactome
	BIND
	etc.
MAPPING DATA
	Chromosome 
	Band
	Position on specific maps (genetic, RH)
	Genomic position - start and stop plus build
	Links to images such as browser images (we actually show the browser
image in addition to links.) 
RELATED GENES
	Splice variants
	Pseudogenes
	Alleles
	etc.
OTHER DB OBJECTS ASSOC. WITH THE GENE
	Strains
	QTL
	ESTs
	SSLP
	etc.
HOMOLOGS
GENE TYPE
	Splice variant
	Pseudogene
	Alleles 
GENE EVIDENCE
	Known 
	Predicted by homology
	Predicted by EST evidence
	etc.
BIOLOGICAL DATA (CONTROLLED VOCAB/ONTOLOGIES/TEXT) 
Biological Process
Cellular Component
Disease
Domains
Drugs effects
EC number
Evolution
Expression
Family
Homology details
Molecular Function
Mutation/over- and underexpression
Pathway
Phenotype
Physical interaction
Protein modifications
Regulation
Size
Transcript structure
etc

 <<gene page.doc>> 
Susan K. Bromberg, Ph.D.
Curation Team Leader
Rat Genome Database (http://www.rgd.mcw.edu)
Bioinformatics Research Center (http://www.brc.mcw.edu)
Medical College of Wisconsin
8701 Watertown Plank Rd. 
Milwaukee, WI 53226
414-456-7515
sbr...@ma...