Re: [gmod-cmap] Help: Import data by using BLAST

[Lee A. <ope...@gm...>]

2009/3/25 Lee Amy <ope...@gm...>:
> 2009/3/25 Ken Youens-Clark <ky...@gm...>:
>> On Mar 25, 2009, at 10:16 AM, Lee Amy wrote:
>>
>>> I encounter some data import tasks in recent days and I have no idea
>>> to deal with it correctly.
>>>
>>> There are two data sets A and B. I use NCBI BLAST to get results about
>>> their identity. So The A data set will be map A and another will be
>>> map B. My task is to make correspondence between the A's items and B's
>>> items based on E-Vaule. For instance, I could set up a threshold 0.001
>>> so any E-Value of alignment pair between A and B will make a
>>> correspondence.
>>>
>>> I don't know how to solve such problems. So could any one show me
>>> some hints?
>>
>> Amy,
>>
>> If you have established meaningful feature accessions (in the
>> "cmap_feature.feature_acc" field), then you simply need to create a
>> tab-delimited file naming "feature_acc1," "feature_acc2," and the
>> correspondence type to relate each of the A-B pairs that are above
>> your threshold.
>>
>> ky
>>
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> Thanks, Ken. I read mails at the list before I post. It seems there
> are some similar problems I ever asked. Thank you very much. I could
> use this way to process the results fast.
>
> Regards,
>
> Amy
>
Ken,

I have imported the BLAST correspondences into maps by using
tab-delimited file. Anyway, I set up the "connecting_line_type" to
ribbon at the configuration file and set up "ribbon_color" to yellow
at evidence_type part. However, after I purge the cache data entirely
the the line of correspondence is still "direct", and the color is
blue.

So could you tell me how to enable that by using ribbon?

Thanks very much.

Amy